Function reference • microdiluteR

All functions

add_concentration() generate_concentration_list() ask_concentration_list() match_concentration(): Add concentration metadata

add_treatment() generate_treatment_list() ask_treatment_list() match_treatment(): Add treatment metadata

apply_sign_test(): Apply sign test

bma: Absorption values from six broth microdilution assays conducted on 96-well plates

calculate_growth_performance() calculate_percentage_change() summarize_growth_performance() plot_growth_performance(): Calculate and visualize growth performance

check_well_positions() check_monotonicity(): Check monotonicity of well positions across groups

generate_experiment_list() ask_experiment_list(): Generate list of experiment names from user parameters

generate_group_list() ask_group_list(): Generate list of group IDs from user parameters

read_plates() read_plate(): Read multiple text files from photometer measurement

subtract_T0(): Subtract timepoint T0 and remove from data

tidy_plates(): Add metadata to values from photometer measurements

tidy_plates_via_params(): Tidy multiple 96-well plates via parameters

tidy_plates_via_prompts(): Read raw photometry data and add meta data based on user input

tidy_single_plate(): Tidy single 96-well plate via parameters

validate_cells() apply_validation_method() ask_validity_method() ask_threshold() ask_invalid_samples() update_validity(): Check validity of each cell in data frame.